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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7361150_7385280_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
7361150 - 7385280
Intron Length:
24131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGCACA
5'SS Class:
major
3'SS Sequence:
TTTCCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTAACTTTACCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
65.7
40.1
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
89.6
0.89
0.6
84.7
22.9
Minor 5ss
41.9
-0.9
2.8
55.8
42.2
Minor BPS
55.3
0.14
1.7
63.5
42.2

Associated Gene:

Gene:
FHL1
Ensembl Gene ID:
ENSAPLG00000031131
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017799
7358017 - 7385782
27766