About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7361150_7387732_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7361150 - 7387732
Intron Length:
26583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTAACTTTACCC
Flanking Amino Acid:
LQRGQDLLPPGPGSYTVGTM
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
27.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
89.6
0.89
0.6
84.7
22.9
Minor 5ss
40.6
-1.1
3.1
57.4
46.8
Minor BPS
55.3
0.14
1.7
63.5
42.2

Associated Gene:

Gene:
FHL1
Ensembl Gene ID:
ENSAPLG00000031131
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043879
7358017 - 7387790
29774