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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7401386_7402014_R

Intron Information:

Intron Rank:
14
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
7401386 - 7402014
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATCCTTG
5'SS Class:
strong_minor
3'SS Sequence:
ACCCTCTCTGCAG|C
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TCTTCCTTAACC
Flanking Amino Acid:
LFRMWYNFDHNYLKPLLTHS
Intron Amino Acid Position:
560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.1
0.19
1.2
56
43.9
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
75.7
0.58
0.8
69.2
30.7
Minor 5ss
87.7
1.27
1.1
81.3
32.5
Minor BPS
90.7
1.26
0.9
90.55
30.7

Associated Gene:

Gene:
SLC9A6
Ensembl Gene ID:
ENSAPLG00000012890
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013497
7400585 - 7416595
16011