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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7404156_7405695_R

Intron Information:

Intron Rank:
10
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
7404156 - 7405695
Intron Length:
1540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
AGTACAAATACAG|C
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
GTTTCCTTAACA
Flanking Amino Acid:
FNPTFVVGAFLAIFLGRAAN
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.9
0.02
1.2
57.1
42.4
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
58.1
0.18
1.1
48.7
42.6
Minor 5ss
98.8
1.64
0.5
96
12.5
Minor BPS
91.5
1.3
0.8
92.6
26.7

Associated Gene:

Gene:
SLC9A6
Ensembl Gene ID:
ENSAPLG00000012890
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013497
7400585 - 7416595
16011