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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7406116_7406339_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7406116 - 7406339
Intron Length:
224

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAC
U12 Branch Point Sequence:
TCTAACGTGATA
Flanking Amino Acid:
FLLAEACGFTGVVAVLFCGI
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.9
76.1
38.1
Major BPS
66.8
0.42
1.2
69.6
35.5
Major PPT
73.8
0.54
0.8
65
36.4
Minor 5ss
34.8
-1.7
4
50.9
45.8
Minor BPS
45.5
-0.3
2.2
59.62
40.5

Associated Gene:

Gene:
SLC9A6
Ensembl Gene ID:
ENSAPLG00000012890
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013497
7400585 - 7416595
16011