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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7406446_7406670_R

Intron Information:

Intron Rank:
7
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
7406446 - 7406670
Intron Length:
225

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
TTA|ATATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
AACAATCTGCAAC|G
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTAACAA
U12 Branch Point Sequence:
TTGTCCTTAACA
Flanking Amino Acid:
GAATGVVTALVTKFTKLREF
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
31.6
-1.1
3.3
48.7
42.6
Major BPS
61.8
0.29
1.1
69.7
35.6
Major PPT
30.5
-1.1
3.1
34.2
40
Minor 5ss
98.7
1.62
0.6
95.7
10.4
Minor BPS
90.6
1.27
0.9
91.48
29.8

Associated Gene:

Gene:
SLC9A6
Ensembl Gene ID:
ENSAPLG00000012890
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013497
7400585 - 7416595
16011