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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7406813_7409787_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7406813 - 7409787
Intron Length:
2975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
CTCCCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TTTTTCTCCCTC
Flanking Amino Acid:
LNDAVAIVLSSSIVAYQPAG
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.3
68.8
42.2
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
82.8
0.74
0.7
80
25.3
Minor 5ss
37.8
-1.4
3.3
49.8
41.1
Minor BPS
39
-0.8
3.6
65.51
41

Associated Gene:

Gene:
SLC9A6
Ensembl Gene ID:
ENSAPLG00000012890
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013497
7400585 - 7416595
16011