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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7409894_7410051_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7409894 - 7410051
Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTATTTGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CCTTCTTGAATG
Flanking Amino Acid:
FGAIVSATDPVTVLAIFHEL
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
76.7
34.9
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
79.9
0.67
1
80.5
36.8
Minor 5ss
45.6
-0.5
2.5
57.3
47.4
Minor BPS
58.7
0.14
1.5
59.4
43.3

Associated Gene:

Gene:
SLC9A6
Ensembl Gene ID:
ENSAPLG00000012890
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013497
7400585 - 7416595
16011