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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7410165_7411052_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7410165 - 7411052
Intron Length:
888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGAGGT
5'SS Class:
major
3'SS Sequence:
TCTGCTTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTACAC
U12 Branch Point Sequence:
TCTGCTTCCACA
Flanking Amino Acid:
LGTAISCLMIGSVMYGCVAL
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
65.9
40.1
Major BPS
60.5
0.26
1.1
70.3
34.5
Major PPT
77.8
0.63
0.8
72
32.6
Minor 5ss
26.3
-2.7
3.3
30
43
Minor BPS
47.8
-0.1
2.1
62.68
44.2

Associated Gene:

Gene:
SLC9A6
Ensembl Gene ID:
ENSAPLG00000012890
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013497
7400585 - 7416595
16011