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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7412402_7416318_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7412402 - 7416318
Intron Length:
3917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGGCT
5'SS Class:
major
3'SS Sequence:
CCTCTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
CTCGTCTCACCC
Flanking Amino Acid:
LHETGLAMIYGVLVGVVLRY
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
66.9
38.5
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
76.9
0.6
0.7
68.7
31.7
Minor 5ss
26.9
-2.7
3.5
39.6
45.9
Minor BPS
45.2
-0.3
1.9
53.1
45.1

Associated Gene:

Gene:
SLC9A6
Ensembl Gene ID:
ENSAPLG00000012890
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013497
7400585 - 7416595
16011