About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7416849_7416977_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7416849 - 7416977
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTGAGTGAG
5'SS Class:
major
3'SS Sequence:
TTGTCTCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCGCAG
U12 Branch Point Sequence:
CCGTCCGCAGCC
Flanking Amino Acid:
LAHAAFSAAQHRSYMRLTEK
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.1
0.33
1.3
59.3
41.8
Major BPS
43.5
-0.4
1.7
53.3
44.2
Major PPT
78.7
0.65
0.8
73.8
31.3
Minor 5ss
27.5
-2.6
3
26.5
37
Minor BPS
41.5
-0.6
2.3
49.89
46.7

Associated Gene:

Gene:
MMGT1
Ensembl Gene ID:
ENSAPLG00000018112
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034922
7415966 - 7420057
4092