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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7417942_7418894_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7417942 - 7418894
Intron Length:
953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATGTTTT
5'SS Class:
weak_major
3'SS Sequence:
CTTTATTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACCTTTATT
Flanking Amino Acid:
DMDATSELKNKTFDTLRNHP
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
0.9
83.3
29.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
77.6
0.62
1
78.9
33
Minor 5ss
63.8
0.47
2.2
75.6
33.8
Minor BPS
72.5
0.79
1.6
89.05
35.4

Associated Gene:

Gene:
MMGT1
Ensembl Gene ID:
ENSAPLG00000018112
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034922
7415966 - 7420057
4092