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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7430868_7431273_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7430868 - 7431273
Intron Length:
406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTATA
5'SS Class:
major
3'SS Sequence:
TTCTCTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
ATGAAATTACTT
Flanking Amino Acid:
FIEFAIKEAARFKKRVLIQH
Intron Amino Acid Position:
935

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
80.9
32.8
Major BPS
54
0.1
1
59.7
32.6
Major PPT
79.3
0.66
0.7
73.3
31.6
Minor 5ss
41.8
-0.9
2.5
51.7
44.8
Minor BPS
44.2
-0.3
2
61.35
42.4

Associated Gene:

Gene:
INTS6L
Ensembl Gene ID:
ENSAPLG00000013725
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034140
7430768 - 7477499
46732
ENSAPLT00000029179
7430768 - 7467545
36778
ENSAPLT00000014309
7430768 - 7475996
45229