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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7431368_7432161_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7431368 - 7432161
Intron Length:
794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTCAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTTCTTCAAG
Flanking Amino Acid:
VMKEVRKPGRNYEKIFSLLE
Intron Amino Acid Position:
904

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
27.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
84
0.76
0.9
83.6
31.9
Minor 5ss
44.5
-0.6
2.8
60
38.4
Minor BPS
60.5
0.18
2
72.05
40.8

Associated Gene:

Gene:
INTS6L
Ensembl Gene ID:
ENSAPLG00000013725
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034140
7430768 - 7477499
46732
ENSAPLT00000030272
7429917 - 7467545
37629
ENSAPLT00000029179
7430768 - 7467545
36778
ENSAPLT00000014309
7430768 - 7475996
45229
ENSAPLT00000045528
7429917 - 7467545
37629