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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7434270_7434746_R

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7434270 - 7434746
Intron Length:
477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACATG
5'SS Class:
strong_major
3'SS Sequence:
ATTATAAAACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTATTATAAAA
Flanking Amino Acid:
AGFHIGLLNKDLKPQAFRNA
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
75.1
41.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
54.9
0.11
1.1
47.3
43.6
Minor 5ss
42.3
-0.8
3
56.9
47.4
Minor BPS
53.4
0.1
1.7
69.98
35.7

Associated Gene:

Gene:
INTS6L
Ensembl Gene ID:
ENSAPLG00000013725
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030272
7429917 - 7467545
37629
ENSAPLT00000029179
7430768 - 7467545
36778
ENSAPLT00000014309
7430768 - 7475996
45229
ENSAPLT00000045528
7429917 - 7467545
37629
ENSAPLT00000034140
7430768 - 7477499
46732