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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7434963_7436546_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7434963 - 7436546
Intron Length:
1584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTATTG
5'SS Class:
major
3'SS Sequence:
GATTCCATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
GATTCTTTAACT
Flanking Amino Acid:
ISYLKKLSQQTKIESERIIG
Intron Amino Acid Position:
535

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
65.3
41.4
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
71.3
0.48
0.9
67.6
38.6
Minor 5ss
40.2
-1.1
3.4
55.8
48.4
Minor BPS
83.7
1.14
1
90.17
33.2

Associated Gene:

Gene:
INTS6L
Ensembl Gene ID:
ENSAPLG00000013725
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014309
7430768 - 7475996
45229
ENSAPLT00000045528
7429917 - 7467545
37629
ENSAPLT00000034140
7430768 - 7477499
46732
ENSAPLT00000029179
7430768 - 7467545
36778