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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7434963_7437406_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7434963 - 7437406
Intron Length:
2444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTTCC
5'SS Class:
major
3'SS Sequence:
GATTCCATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
GATTCTTTAACT
Flanking Amino Acid:
LKTMPPYYLLTKIESERIIG
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
70.2
34.6
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
71.3
0.48
0.9
67.6
38.6
Minor 5ss
47.7
-0.2
2.4
59.1
40.8
Minor BPS
83.7
1.14
1
90.17
33.2

Associated Gene:

Gene:
INTS6L
Ensembl Gene ID:
ENSAPLG00000013725
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030272
7429917 - 7467545
37629