About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7437502_7443065_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7437502 - 7443065
Intron Length:
5564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAA
U12 Branch Point Sequence:
ATAAACAAAACC
Flanking Amino Acid:
YNYPVLLPLLDDLFKVHKLK
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
87
30
Major BPS
66.3
0.4
1.1
68
34.4
Major PPT
84.5
0.78
0.8
79.8
32.1
Minor 5ss
36
-1.6
3.1
50.1
46.4
Minor BPS
44.1
-0.4
2
56.96
40.6

Associated Gene:

Gene:
INTS6L
Ensembl Gene ID:
ENSAPLG00000013725
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014309
7430768 - 7475996
45229
ENSAPLT00000045528
7429917 - 7467545
37629
ENSAPLT00000034140
7430768 - 7477499
46732
ENSAPLT00000030272
7429917 - 7467545
37629
ENSAPLT00000029179
7430768 - 7467545
36778