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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7446366_7448239_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7446366 - 7448239
Intron Length:
1874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTAA
5'SS Class:
major
3'SS Sequence:
GTTTAAATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTGTTTAAAT
Flanking Amino Acid:
SGPDPAPIGEDGLVDSSRPI
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.4
36.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
71.9
0.49
1
68.1
42.1
Minor 5ss
34.3
-1.8
3.5
46.3
49
Minor BPS
62.5
0.47
1.9
80.63
41.5

Associated Gene:

Gene:
INTS6L
Ensembl Gene ID:
ENSAPLG00000013725
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034140
7430768 - 7477499
46732
ENSAPLT00000030272
7429917 - 7467545
37629
ENSAPLT00000029179
7430768 - 7467545
36778
ENSAPLT00000014309
7430768 - 7475996
45229
ENSAPLT00000045528
7429917 - 7467545
37629