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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7466970_7467080_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7466970 - 7467080
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCTCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
GCCCGCTCACGC
Flanking Amino Acid:
AKGAVEIFMKLRARDPASRG
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
74.9
35.3
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
74.9
0.56
0.8
69
31.5
Minor 5ss
27.6
-2.6
3
32.2
42.5
Minor BPS
34.7
-1.1
2.1
36.1
41

Associated Gene:

Gene:
INTS6L
Ensembl Gene ID:
ENSAPLG00000013725
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034140
7430768 - 7477499
46732
ENSAPLT00000030272
7429917 - 7467545
37629
ENSAPLT00000029179
7430768 - 7467545
36778
ENSAPLT00000014309
7430768 - 7475996
45229
ENSAPLT00000045528
7429917 - 7467545
37629