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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7470856_7475767_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
7470856 - 7475767
Intron Length:
4912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTCCTCTTTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
89.5
0.89
0.6
88
22
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
42.9
-0.4
3.7
80.22
41.9

Associated Gene:

Gene:
INTS6L
Ensembl Gene ID:
ENSAPLG00000013725
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034140
7430768 - 7477499
46732