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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7494796_7497993_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7494796 - 7497993
Intron Length:
3198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGAAA
U12 Branch Point Sequence:
TCTGTTTGAAAA
Flanking Amino Acid:
GTVKPQCCVDIVIRHRDVRA
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
65.4
0.38
1.4
75.9
36.3
Major PPT
90
0.9
0.6
85.3
22
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
49.3
-0
1.6
60.4
40

Associated Gene:

Gene:
MOSPD1
Ensembl Gene ID:
ENSAPLG00000013746
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018508
7488680 - 7500996
12317
ENSAPLT00000014327
7494271 - 7502922
8652
ENSAPLT00000031118
7488680 - 7502922
14243