About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7498221_7500146_F


Intron Information:

Intron Rank:
3

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
7498221 - 7500146

Intron Length:
1926

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTAGTTGAA

5'SS Class:
major

3'SS Sequence:
TTTTGTGTTTCAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
AGATAAT

U12 Branch Point Sequence:
TAATCCTTACAA

Flanking Amino Acid:
VFFEQTLCQPENRTASSGPS

Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
76.1
0.62
1.1
70.4
35.6

Major BPS
63.8
0.34
1.2
64.1
39.8

Major PPT
86.8
0.83
0.9
84.6
36

Minor 5ss
30.7
-2.2
3.4
40
46.1

Minor BPS
62.3
0.38
1.7
71.13
40.3

Associated Gene:

Gene:
MOSPD1

Ensembl Gene ID:

Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

7488680 - 7502922
14243

7488680 - 7500996
12317

7494271 - 7502922
8652