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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7500309_7500892_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7500309 - 7500892
Intron Length:
584

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTATAATTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTCTATAATT
Flanking Amino Acid:
NQKLVAAYVLDSKSSHTKLS
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.7
0.62
0.9
73.9
40.2
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
75.9
0.89
1.5
92.75
29.1

Associated Gene:

Gene:
MOSPD1
Ensembl Gene ID:
ENSAPLG00000013746
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018508
7488680 - 7500996
12317
ENSAPLT00000014327
7494271 - 7502922
8652