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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7500309_7502716_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7500309 - 7502716
Intron Length:
2408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TAGTTCTTAATT
Flanking Amino Acid:
NQKLVAAYVLGLITMVILRT
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
87.1
0.84
0.7
84.6
30.3
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
78.3
0.97
1.1
84.55
36.3

Associated Gene:

Gene:
MOSPD1
Ensembl Gene ID:
ENSAPLG00000013746
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031118
7488680 - 7502922
14243