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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7500997_7502716_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
7500997 - 7502716
Intron Length:
1720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TAGTTCTTAATT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
71.7
36.2
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
87.1
0.84
0.7
84.6
30.3
Minor 5ss
30.6
-2.2
3.2
36.8
47.7
Minor BPS
78.3
0.97
1.1
84.55
36.3

Associated Gene:

Gene:
MOSPD1
Ensembl Gene ID:
ENSAPLG00000013746
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014327
7494271 - 7502922
8652