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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7511619_7512761_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7511619 - 7512761
Intron Length:
1143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATGCC
5'SS Class:
major
3'SS Sequence:
GCTGTGTTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTCTCATATCT
Flanking Amino Acid:
EISHHTDSVGCLSSHALDDN
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
68.3
35
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
76.8
0.6
1
72.6
42.4
Minor 5ss
33.4
-1.9
3.2
41.4
40.3
Minor BPS
57.5
0.31
1.9
82.25
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029052
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023250
7510085 - 7523807
13723