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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7513874_7514570_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7513874 - 7514570
Intron Length:
697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TGCCTTCTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTAATGGTGATA
Flanking Amino Acid:
PSPSPTRRFSSRRSQSPINC
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.5
1.14
0.6
94.3
17.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
78.9
0.65
0.8
77.1
31.7
Minor 5ss
40.3
-1.1
2.8
54
43.3
Minor BPS
40
-0.7
2.5
54.5
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029052
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023250
7510085 - 7523807
13723