About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7515760_7515838_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7515760 - 7515838
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
AGGACAATACAT
Flanking Amino Acid:
NLMNRETVHEREVQVAMQMS
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
84.2
33.9
Major BPS
66.1
0.4
1
73
31.5
Major PPT
88
0.85
0.6
84.7
23
Minor 5ss
44.7
-0.6
3.1
66
45.2
Minor BPS
38.4
-0.8
2
51.9
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029052
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023250
7510085 - 7523807
13723