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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7515883_7517851_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7515883 - 7517851
Intron Length:
1969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CCTACTCTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTATCTTAATT
Flanking Amino Acid:
PSSRLHQIKQEEGMNLMNRE
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
100
1.24
0.5
100
0
Major PPT
74.9
0.56
0.8
68.5
31.8
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
81.4
1.06
1.1
92.3
29.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029052
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023250
7510085 - 7523807
13723