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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7517909_7522919_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7517909 - 7522919
Intron Length:
5011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
AGTGTTTCAGTT
Flanking Amino Acid:
STTVMNRHSLFVPSSPIRIP
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.1
31.1
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
89.7
0.89
0.7
85
29.8
Minor 5ss
29.9
-2.3
3.3
35
42.5
Minor BPS
44.4
-0.3
1.7
58.46
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029052
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023250
7510085 - 7523807
13723