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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7531291_7532608_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7531291 - 7532608
Intron Length:
1318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
CACTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGCGATTTAATC
Flanking Amino Acid:
STTVMSRHSMLLSSSPIRIP
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
80.4
33.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
85.8
0.81
0.8
83.9
30.7
Minor 5ss
34.1
-1.8
3.3
45.4
43.9
Minor BPS
52.3
0.05
1.6
59.34
40.4

Associated Gene:

Gene:
FAM122B
Ensembl Gene ID:
ENSAPLG00000014109
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014729
7531261 - 7539376
8116