About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7533083_7533160_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7533083 - 7533160
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTATTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TTTTTTGTATTC
Flanking Amino Acid:
DLMNRETAHEREVQTAMQIS
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
82
0.72
0.8
74.7
40
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
48.9
-0.1
2.2
68.82
37.9

Associated Gene:

Gene:
FAM122B
Ensembl Gene ID:
ENSAPLG00000014109
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014729
7531261 - 7539376
8116