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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7533216_7533440_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7533216 - 7533440
Intron Length:
225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATCTCT
5'SS Class:
major
3'SS Sequence:
TTTGTATTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTGTATTTACA
Flanking Amino Acid:
SQSWEESLSLSDNDLDKSEK
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
66.9
39
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
86.7
0.82
0.8
80.7
35.9
Minor 5ss
46.7
-0.3
2.8
63.1
43.4
Minor BPS
52.2
0.06
2
71.92
39.8

Associated Gene:

Gene:
FAM122B
Ensembl Gene ID:
ENSAPLG00000014109
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014729
7531261 - 7539376
8116