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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7534812_7535345_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7534812 - 7535345
Intron Length:
534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTCTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAA
U12 Branch Point Sequence:
CTTTCACTATCA
Flanking Amino Acid:
PIPSPTRRFSNRRSQSPINC
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.2
26.3
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
78.1
0.63
0.8
70.9
40.2
Minor 5ss
37.7
-1.4
2.7
46.1
36.1
Minor BPS
48.8
-0
2.2
69.37
42.6

Associated Gene:

Gene:
FAM122B
Ensembl Gene ID:
ENSAPLG00000014109
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014729
7531261 - 7539376
8116