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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7535411_7538040_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7535411 - 7538040
Intron Length:
2630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTATTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
GTTTGATTATTT
Flanking Amino Acid:
PSVLGPIKRKGEMETESQPK
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81.7
32.2
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
86.4
0.82
0.7
84.9
29.7
Minor 5ss
35.2
-1.7
3.5
49.1
47.1
Minor BPS
48.6
-0
2.2
73.8
43.2

Associated Gene:

Gene:
FAM122B
Ensembl Gene ID:
ENSAPLG00000014109
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014729
7531261 - 7539376
8116