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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7546791_7551622_F

Intron Information:

Intron Rank:
150275
Intron Class:
major
Intron Phase:
Intron Coordinates:
7546791 - 7551622
Intron Length:
4832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAATAAT
U12 Branch Point Sequence:
TTTACAGTGAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
62.3
0.31
1.3
64.3
39.7
Major PPT
72
0.5
0.7
64.9
30.7
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
46.2
-0.2
2.4
74.57
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030768
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041694
7546436 - 7555077
8642