Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7593555_7595701_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7593555 - 7595701

Intron Length:

2147

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAACTTC

5'SS Class:

strong_major

3'SS Sequence:

TTTTATTTGACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTATTTGACA

Flanking Amino Acid:

QYNPKMVKVASLLVKRTPRS

Intron Amino Acid Position:

169

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

75.6

35.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

82.9

0.74

80.1

37.1

Minor 5ss

47.8

-0.2

2.9

67.4

Minor BPS

73.1

0.72

1.4

83.34

30.2

Associated Gene:

Gene:

HPRT1

Ensembl Gene ID:

ENSAPLG00000021425

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032493

7590707 - 7607849

17143

ENSAPLT00000018916

7590707 - 7607977

17271