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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7605861_7607822_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7605861 - 7607822
Intron Length:
1962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CTCACCTTATTT
Flanking Amino Acid:
MATPSPCIVIRDDEQGYDL
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.6
37.6
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
88
0.85
0.7
85.4
28.4
Minor 5ss
27.7
-2.6
3
29.4
36.9
Minor BPS
59
0.36
1.7
72.13
45.2

Associated Gene:

Gene:
HPRT1
Ensembl Gene ID:
ENSAPLG00000021425
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032493
7590707 - 7607849
17143