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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7617772_7621040_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
7617772 - 7621040
Intron Length:
3269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTATTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
TTCTCCCCAACT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.3
40.1
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
74.7
0.56
1
69.9
39.4
Minor 5ss
37.7
-1.4
3.1
47.3
48.3
Minor BPS
64
0.52
1.9
85.29
40.8

Associated Gene:

Gene:
PHF6
Ensembl Gene ID:
ENSAPLG00000014748
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047113
7617299 - 7643017
25719