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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7620749_7621040_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
7620749 - 7621040
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGGAAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTTTAAACA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.3
40.1
Major BPS
100
1.24
0.5
100
0
Major PPT
77.5
0.62
1
74.6
38.6
Minor 5ss
37.7
-1.4
3.1
47.3
48.3
Minor BPS
66.5
0.51
1.6
76.76
34.5

Associated Gene:

Gene:
PHF6
Ensembl Gene ID:
ENSAPLG00000014748
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015392
7620392 - 7643017
22626