Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7624148_7633521_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7624148 - 7633521

Intron Length:

9374

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAATTA

5'SS Class:

strong_major

3'SS Sequence:

ACTCCTAAAGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

TGTTTTCTAACT

Flanking Amino Acid:

KHKKTTHNSEDLEESINEHE

Intron Amino Acid Position:

140

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.9

0.8

0.9

80.2

28.1

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

61.4

0.26

56.6

37.1

Minor 5ss

40.9

-1

3.2

48.2

Minor BPS

67.4

0.62

1.6

84.98

35.2

Associated Gene:

Gene:

PHF6

Ensembl Gene ID:

ENSAPLG00000014748

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047113

7617299 - 7643017

25719