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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7633566_7633878_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7633566 - 7633878
Intron Length:
313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAACTATT
5'SS Class:
major
3'SS Sequence:
ACTTTGTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CAGTTTTCAACT
Flanking Amino Acid:
IREKPSQGIYMILCRKHKKT
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1.2
83.8
34.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
78.5
0.64
0.9
72.7
37
Minor 5ss
49.6
-0
2.6
73.5
35.5
Minor BPS
56.7
0.29
1.6
68.45
42.9

Associated Gene:

Gene:
PHF6
Ensembl Gene ID:
ENSAPLG00000014748
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047113
7617299 - 7643017
25719
ENSAPLT00000015392
7620392 - 7643017
22626