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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7637906_7642785_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
7637906 - 7642785
Intron Length:
4880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
CTGACGTTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
71.9
33.8
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
91.9
0.94
0.5
89.3
19.5
Minor 5ss
27.1
-2.6
3
26.1
37
Minor BPS
55.7
0.18
2.2
67.7
44.7

Associated Gene:

Gene:
PHF6
Ensembl Gene ID:
ENSAPLG00000014748
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047113
7617299 - 7643017
25719
ENSAPLT00000015392
7620392 - 7643017
22626