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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_76473_77426_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76473 - 77426
Intron Length:
954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTGTC
5'SS Class:
major
3'SS Sequence:
TGCTTATTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATGCTTATTT
Flanking Amino Acid:
EACQKHKEFHEKVRDVLISY
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
73.5
37
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.7
0.62
0.9
70
40.5
Minor 5ss
36
-1.6
3.6
48.3
42.5
Minor BPS
59.9
0.39
2
80.58
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003903
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042455
59971 - 79050
19080
ENSAPLT00000035861
51759 - 78936
27178
ENSAPLT00000004009
51613 - 79050
27438
ENSAPLT00000046376
43241 - 79050
35810