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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_77640_78854_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
77640 - 78854
Intron Length:
1215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TATTCTCCGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TGTTTTATATTC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
70.8
0.47
0.9
71
35.6
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
48.6
-0.1
1.8
63.16
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003903
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046376
43241 - 79050
35810
ENSAPLT00000042455
59971 - 79050
19080
ENSAPLT00000035861
51759 - 78936
27178
ENSAPLT00000004009
51613 - 79050
27438