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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7786745_7797544_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7786745 - 7797544
Intron Length:
10800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAATCAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCATTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
ATTCTCTCATTC
Flanking Amino Acid:
FCWNGQEVVERYSPQITRNG
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
76.4
34.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
77.9
0.63
0.8
72
32.3
Minor 5ss
29.8
-2.3
3
40.4
45.7
Minor BPS
48.8
-0.1
1.7
62.17
37.3

Associated Gene:

Gene:
GPC3
Ensembl Gene ID:
ENSAPLG00000014901
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036183
7705949 - 7909190
203242
ENSAPLT00000015537
7705949 - 7845477
139529