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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7817390_7893506_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7817390 - 7893506
Intron Length:
76117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGGGG
5'SS Class:
major
3'SS Sequence:
CTCTGCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GGAATTCTAACT
Flanking Amino Acid:
RVRNQLRFLAGDHLKVCSQA
Intron Amino Acid Position:
484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
56.7
42.4
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
83
0.74
0.8
80.1
32
Minor 5ss
23.2
-3.1
3.2
29.2
43.4
Minor BPS
48.7
-0
1.7
63.78
39.9

Associated Gene:

Gene:
GPC3
Ensembl Gene ID:
ENSAPLG00000014901
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036183
7705949 - 7909190
203242