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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7927154_7927273_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7927154 - 7927273
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTGCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTTGTAAAACC
Flanking Amino Acid:
QENSMQVSQKVFQGCGQPKT
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
69.5
41.5
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
74.8
0.56
0.8
71.9
32.7
Minor 5ss
31.4
-2.1
3.2
40.6
45.6
Minor BPS
48.2
-0.1
2.3
70.7
41

Associated Gene:

Gene:
GPC4
Ensembl Gene ID:
ENSAPLG00000027678
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039431
7926965 - 7930823
3859