Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_7927421_7927851_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7927421 - 7927851

Intron Length:

431

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTAATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTGGAT

U12 Branch Point Sequence:

TTTTTTTTAATA

Flanking Amino Acid:

TAAGTSLDRLVTDVKEKLKQ

Intron Amino Acid Position:

113

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

71.1

32.7

Major BPS

58.9

0.22

1.5

59.3

47.1

Major PPT

86.6

0.82

0.7

85.3

27.9

Minor 5ss

28.6

-2.4

32.8

35.9

Minor BPS

82.2

1.01

0.9

86.33

25.3

Associated Gene:

Gene:

GPC4

Ensembl Gene ID:

ENSAPLG00000027678

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039431

7926965 - 7930823

3859